Natural selection is the process by which genetically heritable traits become more or less common in a population over successive generations. It is a key mechanism of evolution.
The natural genetic variation within a population of organisms means that some individuals will survive and reproduce more successfully than others in their current environment. For example, the peppered moth exists in both light and dark colors in the United Kingdom, but during the industrial revolution many of the trees on which the moths rested became blackened by soot, giving the dark-colored moths an advantage in hiding from predators. This gave dark-colored moths a better chance of surviving to produce dark-colored offspring, and in just a few generations the majority of the moths were dark. Factors which affect reproductive success are also important, an issue which Charles Darwin developed in his ideas on sexual selection.
Natural selection acts on the phenotype, or the observable characteristics of an organism, but the genetic (heritable) basis of any phenotype which gives a reproductive advantage will become more common in a population (see allele frequency). Over time, this process can result in adaptations that specialize populations for particular ecological niches and may eventually result in the emergence of new species. In other words, natural selection is an important process (though not the only process) by which evolution takes place within a population of organisms. As opposed to artificial selection, in which humans favor specific traits, in natural selection the environment acts as a sieve through which only certain variations can pass.
Natural selection is one of the cornerstones of modern biology. The term was introduced by Darwin in his influential 1859 book On the Origin of Species, in which natural selection was described as analogous to artificial selection, a process by which animals and plants with traits considered desirable by human breeders are systematically favored for reproduction. The concept of natural selection was originally developed in the absence of a valid theory of heredity; at the time of Darwin's writing, nothing was known of modern genetics. The union of traditional Darwinian evolution with subsequent discoveries in classical and molecular genetics is termed the modern evolutionary synthesis. Natural selection remains the primary explanation for adaptive evolution.
Darwin's illustrations of beak variation in the finches of the Galápagos Islands, which hold 13 closely related species that differ most markedly in the shape of their beaks. The beak of each species is suited to its preferred food, suggesting that beak shapes evolved by natural selection.
Natural variation occurs among the individuals of any population of organisms. Many of these differences do not affect survival (such as differences in eye color in humans), but some differences may improve the chances of survival of a particular individual. A rabbit that runs faster than others may be more likely to escape from predators, and algae that are more efficient at extracting energy from sunlight will grow faster. Individuals that have better odds for survival also have better odds for reproduction.
If the traits that give these individuals a reproductive advantage are also heritable, that is, passed from parent to child, then there will be a slightly higher proportion of fast rabbits or efficient algae in the next generation. This is known as differential reproduction. Even if the reproductive advantage is very slight, over many generations any heritable advantage will become dominant in the population, due to exponential growth. In this way the natural environment of an organism "selects" for traits that confer a reproductive advantage, causing gradual changes or evolution of life. This effect was first described and named by Charles Darwin.
The concept of natural selection predates the understanding of genetics, which is the study of heredity. In modern times, it is understood that selection acts on an organism's phenotype, or observable characteristics, but it is the organism's genetic make-up or genotype that is inherited. The phenotype is the result of the genotype and the environment in which the organism lives (see Genotype-phenotype distinction).
This is the link between natural selection and genetics, as described in the modern evolutionary synthesis. Although a complete theory of evolution also requires an account of how genetic variation arises in the first place (such as by mutation and sexual reproduction) and includes other evolutionary mechanisms (such as gene flow), natural selection is still understood as a fundamental mechanism for evolution.
Nomenclature and usage
The term natural selection has slightly different definitions in different contexts. It is most often defined to operate on heritable traits, because these are the traits that directly participate in evolution. However, natural selection is "blind" in the sense that changes in phenotype (physical and behavioral characteristics) can give a reproductive advantage regardless of whether or not the trait is heritable (non heritable traits can be the result of environmental factors or the life experience of the organism).
Following Darwin's primary usage the term is often used to refer to both the evolutionary consequence of blind selection and to its mechanisms. It is sometimes helpful to explicitly distinguish between selection's mechanisms and its effects; when this distinction is important, scientists define "natural selection" specifically as "those mechanisms that contribute to the selection of individuals that reproduce", without regard to whether the basis of the selection is heritable. This is sometimes referred to as "phenotypic natural selection".
Traits that cause greater reproductive success of an organism are said to be selected for, whereas those that reduce success are selected against. Selection for a trait may also result in the selection of other correlated traits that do not themselves directly influence reproductive advantage. This may occur as a result of pleiotropy or gene linkage.
Main article: Fitness (biology)
The concept of fitness is central to natural selection. Broadly, individuals which are more "fit" have better potential for survival, as in the well-known phrase "survival of the fittest". However, as with natural selection above, the precise meaning of the term is much more subtle, and Richard Dawkins manages in his later books to avoid it entirely. (He devotes a chapter of his book, The Extended Phenotype, to discussing the various senses in which the term is used). Modern evolutionary theory defines fitness not by how long an organism lives, but by how successful it is at reproducing. If an organism lives half as long as others of its species, but has twice as many offspring surviving to adulthood, its genes will become more common in the adult population of the next generation.
Though natural selection acts on individuals, the effects of chance mean that fitness can only really be defined "on average" for the individuals within a population. The fitness of a particular genotype corresponds to the average effect on all individuals with that genotype. Very low-fitness genotypes cause their bearers to have few or no offspring on average; examples include many human genetic disorders like cystic fibrosis.
Since fitness is an averaged quantity, it is also possible that a favorable mutation arises in an individual that does not survive to adulthood for unrelated reasons. Fitness also depends crucially upon the environment. Conditions like sickle-cell anemia may have low fitness in the general human population, but because the sickle-cell trait confers immunity from malaria, it has high fitness value in populations which have high malaria infection rates.
Types of selection
Natural selection can act on any phenotypic trait, and selective pressure can be produced by any aspect of the environment, including sexual selection and competition with members of the same species. However, this does not imply that natural selection is always directional and results in adaptive evolution; natural selection often results in the maintenance of the status quo by eliminating less fit variants.
The unit of selection can be the individual or it can be another level within the hierarchy of biological organisation, such as genes, cells, and kin groups. There is still debate about whether natural selection acts at the level of groups or species to produce adaptations that benefit a larger, non-kin group. Selection at a different level such as the gene can result in an increase in fitness for that gene, while at the same time reducing the fitness of the individuals carrying that gene, in a process called intragenomic conflict. Overall, the combined effect of all selection pressures at various levels determines the overall fitness of an individual, and hence the outcome of natural selection.
The life cycle of a sexually reproducing organism. Various components of natural selection are indicated for each life stage.
Natural selection occurs at every life stage of an individual. An individual organism must survive until adulthood before it can reproduce, and selection of those that reach this stage is called viability selection. In many species, adults must compete with each other for mates via sexual selection, and success in this competition determines who will parent the next generation. When individuals can reproduce more than once, a longer survival in the reproductive phase increases the number of offspring, called survival selection.
The fecundity of both females and males (for example, giant sperm in certain species of Drosophila) can be limited via "fecundity selection". The viability of produced gametes can differ, while intragenomic conflicts such as meiotic drive between the haploid gametes can result in gametic or "genic selection". Finally, the union of some combinations of eggs and sperm might be more compatible than others; this is termed compatibility selection.
Main article: Sexual selection
It is useful to distinguish between "ecological selection" and "sexual selection". Ecological selection covers any mechanism of selection as a result of the environment (including relatives, e.g. kin selection, competition, and infanticide), while "sexual selection" refers specifically to competition for mates.
Sexual selection can be intrasexual, as in cases of competition among individuals of the same sex in a population, or intersexual, as in cases where one sex controls reproductive access by choosing among a population of available mates. Most commonly, intrasexual selection involves male–male competition and intersexual selection involves female choice of suitable males, due to the generally greater investment of resources for a female than a male in a single offspring. However, some species exhibit sex-role reversed behavior in which it is males that are most selective in mate choice; the best-known examples of this pattern occur in some fishes of the family Syngnathidae, though likely examples have also been found in amphibian and bird species.
Some features that are confined to one sex only of a particular species can be explained by selection exercised by the other sex in the choice of a mate, for example, the extravagant plumage of some male birds. Similarly, aggression between members of the same sex is sometimes associated with very distinctive features, such as the antlers of stags, which are used in combat with other stags. More generally, intrasexual selection is often associated with sexual dimorphism, including differences in body size between males and females of a species.
Examples of natural selection
Resistance to antibiotics is increased though the survival of individuals which are immune to the effects of the antibiotic, whose offspring then inherit the resistance, creating a new population of resistant bacteria.
A well-known example of natural selection in action is the development of antibiotic resistance in microorganisms. Since the discovery of penicillin in 1928 by Alexander Fleming, antibiotics have been used to fight bacterial diseases. Natural populations of bacteria contain, among their vast numbers of individual members, considerable variation in their genetic material, primarily as the result of mutations. When exposed to antibiotics, most bacteria die quickly, but some may have mutations that make them slightly less susceptible. If the exposure to antibiotics is short, these individuals will survive the treatment. This selective elimination of maladapted individuals from a population is natural selection.
These surviving bacteria will then reproduce again, producing the next generation. Due to the elimination of the maladapted individuals in the past generation, this population contains more bacteria that have some resistance against the antibiotic. At the same time, new mutations occur, contributing new genetic variation to the existing genetic variation. Spontaneous mutations are very rare, and advantageous mutations are even rarer. However, populations of bacteria are large enough that a few individuals will have beneficial mutations. If a new mutation reduces their susceptibility to an antibiotic, these individuals are more likely to survive when next confronted with that antibiotic.
Given enough time, and repeated exposure to the antibiotic, a population of antibiotic-resistant bacteria will emerge. This new changed population of antibiotic-resistant bacteria is optimally adapted to the context it evolved in. At the same time, it is not necessarily optimally adapted any more to the old antibiotic free environment. The end result of natural selection is two populations that are both optimally adapted to their specific environment, while both perform substandard in the other environment.
The widespread use and misuse of antibiotics has resulted in increased microbial resistance to antibiotics in clinical use, to the point that the methicillin-resistant Staphylococcus aureus (MRSA) has been described as a "superbug" because of the threat it poses to health and its relative invulnerability to existing drugs. Response strategies typically include the use of different, stronger antibiotics; however, new strains of MRSA have recently emerged that are resistant even to these drugs.
This is an example of what is known as an evolutionary arms race, in which bacteria continue to develop strains that are less susceptible to antibiotics, while medical researchers continue to develop new antibiotics that can kill them. A similar situation occurs with pesticide resistance in plants and insects. Arms races are not necessarily induced by man; a well-documented example involves the elaboration of the RNA interference pathway in plants as means of innate immunity against viruses.
Evolution by means of natural selection
Main articles: Evolution and Darwinism
A prerequisite for natural selection to result in adaptive evolution, novel traits and speciation, is the presence of heritable genetic variation that results in fitness differences. Genetic variation is the result of mutations, recombinations and alterations in the karyotype (the number, shape, size and internal arrangement of the chromosomes). Any of these changes might have an effect that is highly advantageous or highly disadvantageous, but large effects are very rare. In the past, most changes in the genetic material were considered neutral or close to neutral because they occurred in noncoding DNA or resulted in a synonymous substitution. However, recent research suggests that many mutations in non-coding DNA do have slight deleterious effects. Although both mutation rates and average fitness effects of mutations are dependent on the organism, estimates from data in humans have found that a majority of mutations are slightly deleterious.
The exuberant tail of the peacock is thought to be the result of sexual selection by females. This peacock is an albino; selection against albinos in nature is intense because they are easily spotted by predators or are unsuccessful in competition for mates.
By the definition of fitness, individuals with greater fitness are more likely to contribute offspring to the next generation, while individuals with lesser fitness are more likely to die early or fail to reproduce. As a result, alleles which on average result in greater fitness become more abundant in the next generation, while alleles which generally reduce fitness become rarer. If the selection forces remain the same for many generations, beneficial alleles become more and more abundant, until they dominate the population, while alleles with a lesser fitness disappear. In every generation, new mutations and recombinations arise spontaneously, producing a new spectrum of phenotypes. Therefore, each new generation will be enriched by the increasing abundance of alleles that contribute to those traits that were favored by selection, enhancing these traits over successive generations.
Some mutations occur in so-called regulatory genes. Changes in these can have large effects on the phenotype of the individual because they regulate the function of many other genes. Most, but not all, mutations in regulatory genes result in non-viable zygotes. Examples of nonlethal regulatory mutations occur in HOX genes in humans, which can result in a cervical rib or polydactyly, an increase in the number of fingers or toes. When such mutations result in a higher fitness, natural selection will favor these phenotypes and the novel trait will spread in the population.
X-ray of the left hand of a ten year old boy with polydactyly.
Established traits are not immutable; traits that have high fitness in one environmental context may be much less fit if environmental conditions change. In the absence of natural selection to preserve such a trait, it will become more variable and deteriorate over time, possibly resulting in a vestigial manifestation of the trait, also called evolutionary baggage. In many circumstances, the apparently vestigial structure may retain a limited functionality, or may be co-opted for other advantageous traits in a phenomenon known as preadaptation. A famous example of a vestigial structure, the eye of the blind mole rat, is believed to retain function in photoperiod perception.
Main article: Speciation
Speciation requires selective mating, which result in a reduced gene flow. Selective mating can be the result of 1. Geographic isolation, 2. Behavioral isolation, or 3. Temporal isolation. For example, a change in the physical environment (geographic isolation by an extrinsic barrier) would follow number 1, a change in camouflage for number 2 or a shift in mating times (i.e., one species of deer shifts location and therefore changes its "rut") for number 3. Over time, these subgroups might diverge radically to become different species, either because of differences in selection pressures on the different subgroups, or because different mutations arise spontaneously in the different populations, or because of founder effects – some potentially beneficial alleles may, by chance, be present in only one or other of two subgroups when they first become separated. A lesser-known mechanism of speciation occurs via hybridization, well-documented in plants and occasionally observed in species-rich groups of animals such as cichlid fishes. Such mechanisms of rapid speciation can reflect a mechanism of evolutionary change known as punctuated equilibrium, which suggests that evolutionary change and particularly speciation typically happens quickly after interrupting long periods of stasis.
Genetic changes within groups result in increasing incompatibility between the genomes of the two subgroups, thus reducing gene flow between the groups. Gene flow will effectively cease when the distinctive mutations characterizing each subgroup become fixed. As few as two mutations can result in speciation: if each mutation has a neutral or positive effect on fitness when they occur separately, but a negative effect when they occur together, then fixation of these genes in the respective subgroups will lead to two reproductively isolated populations. According to the biological species concept, these will be two different species.
Main articles: History of evolutionary thought, Inception of Darwin's theory, and Development of Darwin's theory
The modern theory of natural selection derives from the work of Charles Darwin in the nineteenth century.
Several ancient philosophers expressed the idea that nature produces a huge variety of creatures, apparently randomly, and that only those creatures survive that manage to provide for themselves and reproduce successfully; well-known examples include Empedocles and his intellectual successor, Lucretius, while related ideas were later refined by Aristotle. The struggle for existence was later described by Al-Jahiz, who argued that environmental factors influence animals to develop new characteristics to ensure survival. Abu Rayhan Biruni described the idea of artificial selection and argued that nature works in much the same way. Similar ideas were later expressed by Nasir al-Din Tusi and Ibn Khaldun. Such classical arguments were reintroduced in the 18th century by Pierre Louis Maupertuis and others, including Charles Darwin's grandfather Erasmus Darwin. While these forerunners had an influence on Darwinism, they later had little influence on the trajectory of evolutionary thought after Charles Darwin.
Until the early 19th century, the prevailing view in Western societies was that differences between individuals of a species were uninteresting departures from their Platonic idealism (or typus) of created kinds. However, the theory of uniformitarianism in geology promoted the idea that simple, weak forces could act continuously over long periods of time to produce radical changes in the Earth's landscape. The success of this theory raised awareness of the vast scale of geological time and made plausible the idea that tiny, virtually imperceptible changes in successive generations could produce consequences on the scale of differences between species. Early 19th century evolutionists such as Jean Baptiste Lamarck suggested the inheritance of acquired characteristics as a mechanism for evolutionary change; adaptive traits acquired by an organism during its lifetime could be inherited by that organism's progeny, eventually causing transmutation of species. This theory has come to be known as Lamarckism and was an influence on the anti-genetic ideas of the Stalinist Soviet biologist Trofim Lysenko.
In 1859, Charles Darwin set out his theory of evolution by natural selection as an explanation for adaptation and speciation. He defined natural selection as the "principle by which each slight variation [of a trait], if useful, is preserved". The concept was simple but powerful: individuals best adapted to their environments are more likely to survive and reproduce. As long as there is some variation between them, there will be an inevitable selection of individuals with the most advantageous variations. If the variations are inherited, then differential reproductive success will lead to a progressive evolution of particular populations of a species, and populations that evolve to be sufficiently different eventually become different species.
Darwin's ideas were inspired by the observations that he had made on the Beagle voyage, and by the work of two political economists. The first was the Reverend Thomas Malthus, who in An Essay on the Principle of Population, noted that population (if unchecked) increases exponentially whereas the food supply grows only arithmetically; thus inevitable limitations of resources would have demographic implications, leading to a "struggle for existence" as a divinely ordained law "in order to rouse man into action, and form his mind to reason" for the greater good despite the "partial evil" limiting population. The second was Adam Smith who, in The Wealth of Nations, identified a regulating mechanism in free markets, which he referred to as the "invisible hand", which suggests that prices self-adjust according to supplies and demand. When Darwin read Malthus in 1838 he was already primed by his work as a naturalist to appreciate the "struggle for existence" in nature and it struck him that as population outgrew resources, "favourable variations would tend to be preserved, and unfavourable ones to be destroyed. The result of this would be the formation of new species."
Here is Darwin's own summary of the idea, which can be found in the fourth chapter of the Origin:
If during the long course of ages and under varying conditions of life, organic beings vary at all in the several parts of their organisation, and I think this cannot be disputed; if there be, owing to the high geometrical powers of increase of each species, at some age, season, or year, a severe struggle for life, and this certainly cannot be disputed; then, considering the infinite complexity of the relations of all organic beings to each other and to their conditions of existence, causing an infinite diversity in structure, constitution, and habits, to be advantageous to them, I think it would be a most extraordinary fact if no variation ever had occurred useful to each being's own welfare, in the same way as so many variations have occurred useful to man. But if variations useful to any organic being do occur, assuredly individuals thus characterised will have the best chance of being preserved in the struggle for life; and from the strong principle of inheritance they will tend to produce offspring similarly characterised. This principle of preservation, I have called, for the sake of brevity, Natural Selection.
Once he had his theory "by which to work", Darwin was meticulous about gathering and refining evidence as his "prime hobby" before making his idea public. He was in the process of writing his "big book" to present his researches when the naturalist Alfred Russel Wallace independently conceived of the principle and described it in an essay he sent to Darwin to forward to Charles Lyell. Lyell and Joseph Dalton Hooker decided (without Wallace's knowledge) to present his essay together with unpublished writings which Darwin had sent to fellow naturalists, and On the Tendency of Species to form Varieties; and on the Perpetuation of Varieties and Species by Natural Means of Selection was read to the Linnean Society announcing co-discovery of the principle in July 1858. Darwin published a detailed account of his evidence and conclusions in On the Origin of Species in 1859. In the 3rd edition of 1861 Darwin acknowledged that others — notably William Charles Wells in 1813, and Patrick Matthew in 1831 — had proposed similar ideas, but had neither developed them nor presented them in notable scientific publications.
Darwin thought of natural selection by analogy to how farmers select crops or livestock for breeding, which he called "artificial selection"; in his early manuscripts he referred to a 'Nature' which would do the selection. At the time, other mechanisms of evolution such as evolution by genetic drift were not yet explicitly formulated, and Darwin believed that selection was likely only part of the story: "I am convinced that [it] has been the main, but not exclusive means of modification." In a letter to Charles Lyell in September 1860, Darwin regretted the use of the term "Natural Selection", preferring the term "Natural Preservation". For Darwin and his contemporaries, natural selection was essentially synonymous with evolution by natural selection. After the publication of The Origin of Species, educated people generally accepted that evolution had occurred in some form. However, natural selection remained controversial as a mechanism, partly because it was perceived to be too weak to explain the range of observed characteristics of living organisms, and partly because even supporters of evolution balked at its "unguided" and non-progressive nature, a response that has been characterized as the single most significant impediment to the idea's acceptance. However, some thinkers enthusiastically embraced natural selection; after reading Darwin, Herbert Spencer introduced the term survival of the fittest, which became a popular summary of the theory. The fifth edition of On the Origin of Species published in 1869 included Spencer's phrase as an alternative to natural selection, with credit given: "But the expression often used by Mr. Herbert Spencer, of the Survival of the Fittest, is more accurate, and is sometimes equally convenient." Although the phrase is still often used by non-biologists, modern biologists avoid it because it is tautological if "fittest" is read to mean "functionally superior" and is applied to individuals rather than considered as an averaged quantity over populations.
Modern evolutionary synthesis
Main article: Modern evolutionary synthesis
Natural selection relies crucially on the idea of heredity, but it was developed long before the basic concepts of genetics. Although the Austrian monk Gregor Mendel, the father of modern genetics, was a contemporary of Darwin's, his work would lie in obscurity until the early 20th century. Only after the integration of Darwin's theory of evolution with a complex statistical appreciation of Gregor Mendel's 're-discovered' laws of inheritance did natural selection become generally accepted by scientists. The work of Ronald Fisher (who developed the required mathematical language and The Genetical Theory of Natural Selection), J.B.S. Haldane (who introduced the concept of the "cost" of natural selection), Sewall Wright (who elucidated the nature of selection and adaptation), Theodosius Dobzhansky (who established the idea that mutation, by creating genetic diversity, supplied the raw material for natural selection: see Genetics and the Origin of Species), William Hamilton (who conceived of kin selection), Ernst Mayr (who recognised the key importance of reproductive isolation for speciation: see Systematics and the Origin of Species) and many others formed the modern evolutionary synthesis. This synthesis cemented natural selection as the foundation of evolutionary theory, where it remains today.
Impact of the idea
Darwin's ideas, along with those of Adam Smith and Karl Marx, had a profound influence on 19th century thought. Perhaps the most radical claim of the theory of evolution through natural selection is that "elaborately constructed forms, so different from each other, and dependent on each other in so complex a manner" evolved from the simplest forms of life by a few simple principles. This claim inspired some of Darwin's most ardent supporters—and provoked the most profound opposition. The radicalism of natural selection, according to Stephen Jay Gould, lay in its power to "dethrone some of the deepest and most traditional comforts of Western thought". In particular, it challenged long-standing beliefs in such concepts as a special and exalted place for humans in the natural world and a benevolent creator whose intentions were reflected in nature's order and design.
Cell and molecular biology
In the 19th century, Wilhelm Roux, a founder of modern embryology, wrote a book entitled « Der Kampf der Teile im Organismus » (The struggle of parts in the organism) in which he suggested that the development of an organism results from a Darwinian competition between the parts of the embryo, occurring at all levels, from molecules to organs. In recent years, a modern version of this theory has been proposed by Jean-Jacques Kupiec. According to this cellular Darwinism, stochasticity at the molecular level generates diversity in cell types whereas cell interactions impose a characteristic order on the developing embryo.
Social and psychological theory
The social implications of the theory of evolution by natural selection also became the source of continuing controversy. Friedrich Engels, a German political philosopher and co-originator of the ideology of communism, wrote in 1872 that "Darwin did not know what a bitter satire he wrote on mankind when he showed that free competition, the struggle for existence, which the economists celebrate as the highest historical achievement, is the normal state of the animal kingdom". Interpretation of natural selection as necessarily 'progressive', leading to increasing 'advances' in intelligence and civilisation, was used as a justification for colonialism and policies of eugenics, as well as broader sociopolitical positions now described as Social Darwinism. Konrad Lorenz won the Nobel Prize in Physiology or Medicine in 1973 for his analysis of animal behavior in terms of the role of natural selection (particularly group selection). However, in Germany in 1940, in writings that he subsequently disowned, he used the theory as a justification for policies of the Nazi state. He wrote "... selection for toughness, heroism, and social utility...must be accomplished by some human institution, if mankind, in default of selective factors, is not to be ruined by domestication-induced degeneracy. The racial idea as the basis of our state has already accomplished much in this respect." Others have developed ideas that human societies and culture evolve by mechanisms that are analogous to those that apply to evolution of species.
More recently, work among anthropologists and psychologists has led to the development of sociobiology and later evolutionary psychology, a field that attempts to explain features of human psychology in terms of adaptation to the ancestral environment. The most prominent such example, notably advanced in the early work of Noam Chomsky and later by Steven Pinker, is the hypothesis that the human brain is adapted to acquire the grammatical rules of natural language. Other aspects of human behavior and social structures, from specific cultural norms such as incest avoidance to broader patterns such as gender roles, have been hypothesized to have similar origins as adaptations to the early environment in which modern humans evolved. By analogy to the action of natural selection on genes, the concept of memes – "units of cultural transmission", or culture's equivalents of genes undergoing selection and recombination – has arisen, first described in this form by Richard Dawkins and subsequently expanded upon by philosophers such as Daniel Dennett as explanations for complex cultural activities, including human consciousness. Extensions of the theory of natural selection to such a wide range of cultural phenomena have been distinctly controversial and are not widely accepted.
Information and systems theory
In 1922, Alfred Lotka proposed that natural selection might be understood as a physical principle which could be described in terms of the use of energy by a system, a concept that was later developed by Howard Odum as the maximum power principle whereby evolutionary systems with selective advantage maximise the rate of useful energy transformation. Such concepts are sometimes relevant in the study of applied thermodynamics.
The principles of natural selection have inspired a variety of computational techniques, such as "soft" artificial life, that simulate selective processes and can be highly efficient in 'adapting' entities to an environment defined by a specified fitness function. For example, a class of heuristic optimization algorithms known as genetic algorithms, pioneered by John Holland in the 1970s and expanded upon by David E. Goldberg, identify optimal solutions by simulated reproduction and mutation of a population of solutions defined by an initial probability distribution. Such algorithms are particularly useful when applied to problems whose solution landscape is very rough or has many local minima.
Genetic basis of natural selection
The idea of natural selection predates the understanding of genetics. We now have a much better idea of the biology underlying heritability, which is the basis of natural selection.
Genotype and phenotype
See also: Genotype-phenotype distinction.
Natural selection acts on an organism's phenotype, or physical characteristics. Phenotype is determined by an organism's genetic make-up (genotype) and the environment in which the organism lives. Often, natural selection acts on specific traits of an individual, and the terms phenotype and genotype are used narrowly to indicate these specific traits.
When different organisms in a population possess different versions of a gene for a certain trait, each of these versions is known as an allele. It is this genetic variation that underlies phenotypic traits. A typical example is that certain combinations of genes for eye color in humans which, for instance, give rise to the phenotype of blue eyes. (On the other hand, when all the organisms in a population share the same allele for a particular trait, and this state is stable over time, the allele is said to be fixed in that population.)
Some traits are governed by only a single gene, but most traits are influenced by the interactions of many genes. A variation in one of the many genes that contributes to a trait may have only a small effect on the phenotype; together, these genes can produce a continuum of possible phenotypic values.
Directionality of selection
When some component of a trait is heritable, selection will alter the frequencies of the different alleles, or variants of the gene that produces the variants of the trait. Selection can be divided into three classes, on the basis of its effect on allele frequencies.
Directional selection occurs when a certain allele has a greater fitness than others, resulting in an increase of its frequency. This process can continue until the allele is fixed and the entire population shares the fitter phenotype. It is directional selection that is illustrated in the antibiotic resistance example above.
Far more common is stabilizing selection (which is commonly confused with purifying selection), which lowers the frequency of alleles that have a deleterious effect on the phenotype – that is, produce organisms of lower fitness. This process can continue until the allele is eliminated from the population. Purifying selection results in functional genetic features, such as protein-coding genes or regulatory sequences, being conserved over time due to selective pressure against deleterious variants.
Finally, a number of forms of balancing selection exist, which do not result in fixation, but maintain an allele at intermediate frequencies in a population. This can occur in diploid species (that is, those that have two pairs of chromosomes) when heterozygote individuals, who have different alleles on each chromosome at a single genetic locus, have a higher fitness than homozygote individuals that have two of the same alleles. This is called heterozygote advantage or overdominance, of which the best-known example is the malarial resistance observed in heterozygous humans who carry only one copy of the gene for sickle cell anemia. Maintenance of allelic variation can also occur through disruptive or diversifying selection, which favors genotypes that depart from the average in either direction (that is, the opposite of overdominance), and can result in a bimodal distribution of trait values. Finally, balancing selection can occur through frequency-dependent selection, where the fitness of one particular phenotype depends on the distribution of other phenotypes in the population. The principles of game theory have been applied to understand the fitness distributions in these situations, particularly in the study of kin selection and the evolution of reciprocal altruism.
Selection and genetic variation
A portion of all genetic variation is functionally neutral in that it produces no phenotypic effect or significant difference in fitness; the hypothesis that this variation accounts for a large fraction of observed genetic diversity is known as the neutral theory of molecular evolution and was originated by Motoo Kimura. When genetic variation does not result in differences in fitness, selection cannot directly affect the frequency of such variation. As a result, the genetic variation at those sites will be higher than at sites where variation does influence fitness. However, after a period with no new mutation, the genetic variation at these sites will be eliminated due to genetic drift.
Mutation selection balance
Natural selection results in the reduction of genetic variation through the elimination of maladapted individuals and consequently of the mutations that caused the maladaptation. At the same time, new mutations occur, resulting in a mutation-selection balance. The exact outcome of the two processes depends both on the rate at which new mutations occur and on the strength of the natural selection, which is a function of how unfavorable the mutation proves to be. Consequently, changes in the mutation rate or the selection pressure will result in a different mutation-selection balance.
Genetic linkage occurs when the loci of two alleles are linked, or in close proximity to each other on the chromosome. During the formation of gametes, recombination of the genetic material results in reshuffling of the alleles. However, the chance that such a reshuffle occurs between two alleles depends on the distance between those alleles; the closer the alleles are to each other, the less likely it is that such a reshuffle will occur. Consequently, when selection targets one allele, this automatically results in selection of the other allele as well; through this mechanism, selection can have a strong influence on patterns of variation in the genome.
Selective sweeps occur when an allele becomes more common in a population as a result of positive selection. As the prevalence of one allele increases, linked alleles can also become more common, whether they are neutral or even slightly deleterious. This is called genetic hitchhiking. A strong selective sweep results in a region of the genome where the positively selected haplotype (the allele and its neighbours) are essentially the only ones that exist in the population.
Whether a selective sweep has occurred or not can be investigated by measuring linkage disequilibrium, or whether a given haplotype is overrepresented in the population. Normally, genetic recombination results in a reshuffling of the different alleles within a haplotype, and none of the haplotypes will dominate the population. However, during a selective sweep, selection for a specific allele will also result in selection of neighbouring alleles. Therefore, the presence of strong linkage disequilibrium might indicate that there has been a 'recent' selective sweep, and this can be used to identify sites recently under selection.
Background selection is the opposite of a selective sweep. If a specific site experiences strong and persistent purifying selection, linked variation will tend to be weeded out along with it, producing a region in the genome of low overall variability. Because background selection is a result of deleterious new mutations, which can occur randomly in any haplotype, it produces no linkage disequilibrium.
Books are collections of articles that can be downloaded or ordered in print.
* Artificial selection
* Gene-centered view of evolution
* Negative selection
* Unit of selection
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2. ^ a b Fisher RA (1930) The Genetical Theory of Natural Selection Clarendon Press, Oxford
3. ^ Works employing or describing this usage:
Endler JA (1986). Natural Selection in the Wild. Princeton, New Jersey: Princeton University Press. ISBN 0-691-00057-3.
Williams GC (1966). Adaptation and Natural Selection. Oxford University Press.
4. ^ Works employing or describing this usage:
Lande R & Arnold SJ (1983) The measurement of selection on correlated characters. Evolution 37:1210-26
Futuyma DJ (2005) Evolution. Sinauer Associates, Inc., Sunderland, Massachusetts. ISBN 0-87893-187-2
Haldane, J.B.S. 1953. The measurement of natural selection. Proceedings of the 9th International Congress of Genetics. 1: 480-487
5. ^ Sober E (1984; 1993) The Nature of Selection: Evolutionary Theory in Philosophical Focus University of Chicago Press ISBN 0-226-76748-5
6. ^ Modified from Christiansen FB (1984) The definition and measurement of fitness. In: Evolutionary ecology (ed. Shorrocks B) pp65–79. Blackwell Scientific, Oxford by adding survival selection in the reproductive phase
7. ^ Pitnick S & Markow TA (1994) Large-male advantage associated with the costs of sperm production in Drosophila hydei, a species with giant sperm. Proc Natl Acad Sci USA 91:9277-81; Pitnick S (1996) Investment in testes and the cost of making long sperm in Drosophila. Am Nat 148:57-80
8. ^ Andersson, M (1995). Sexual Selection. Princeton, New Jersey: Princeton University Press. ISBN 0-691-00057-3.
9. ^ Eens M, Pinxten R. (2000). Sex-role reversal in vertebrates: behavioural and endocrinological accounts. Behav Processes 51(1-3):135-147. PMID 11074317
10. ^ Barlow GW. (2005). How Do We Decide that a Species is Sex-Role Reversed? The Quarterly Review of Biology 80(1):28–35. PMID 15884733
11. ^ "MRSA Superbug News". http://www.inboxrobot.com/news/MRSASuperbug. Retrieved 2006-05-06.
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13. ^ Lucy A, Guo H, Li W, Ding S (2000). "Suppression of post-transcriptional gene silencing by a plant viral protein localized in the nucleus". EMBO J 19 (7): 1672–80. PMID 10747034.
14. ^ Kryukov GV, Schmidt S & Sunyaev S (2005) Small fitness effect of mutations in highly conserved non-coding regions. Human Molecular Genetics 14:2221-9
15. ^ Bejerano G, Pheasant M, Makunin I, Stephen S, Kent WJ, Mattick JS & Haussler D (2004) Ultraconserved elements in the human genome. Science 304:1321-5
16. ^ Eyre-Walker A, Woolfit M, Phelps T. (2006). The distribution of fitness effects of new deleterious amino acid mutations in humans. Genetics 173(2):891-900. PMID 16547091
17. ^ Galis F (1999) Why do almost all mammals have seven cervical vertebrae? developmental constraints, Hox genes, and cancer. J Exp Zool 285:19-26
18. ^ Zakany J, FromentalRamain C, Warot X & Duboule D (1997) Regulation of number and size of digits by posterior Hox genes: a dose-dependent mechanism with potential evolutionary implications. Proc Natl Acad Sci USA 94:13695-700
19. ^ Sanyal S, Jansen HG, de Grip WJ, Nevo E, de Jong WW. (1990). The eye of the blind mole rat, Spalax ehrenbergi. Rudiment with hidden function? Invest Ophthalmol Vis Sci. 1990 31(7):1398-404. PMID 2142147
20. ^ Salzburger W, Baric S, Sturmbauer C. (2002). Speciation via introgressive hybridization in East African cichlids? Mol Ecol 11(3): 619–625. PMID 11918795
21. ^ Empedocles. On Nature. Book II
22. ^ Lucretius. De rerum natura. Book V
23. ^ Aristotle. Physics. Book II, Chapters 4 and 8
24. ^ Conway Zirkle (1941). Natural Selection before the "Origin of Species", Proceedings of the American Philosophical Society 84 (1), p. 71-123.
25. ^ Mehmet Bayrakdar (Third Quarter, 1983). "Al-Jahiz And the Rise of Biological Evolutionism", The Islamic Quarterly. London.
26. ^ Paul S. Agutter & Denys N. Wheatley (2008). Thinking about Life: The History and Philosophy of Biology and Other Sciences. Springer. p. 43. ISBN 1402088655
27. ^ Jan Z. Wilczynski (December 1959). "On the Presumed Darwinism of Alberuni Eight Hundred Years before Darwin". Isis 50 (4): 459–466. doi:10.1086/348801
28. ^ Farid Alakbarov (Summer 2001). A 13th-Century Darwin? Tusi's Views on Evolution, Azerbaijan International 9 (2).
29. ^ Franz Rosenthal and Ibn Khaldun, Muqaddimah, Chapter 6, Part 5
30. ^ Franz Rosenthal and Ibn Khaldun, Muqaddimah, Chapter 6, Part 29
31. ^ Maupertuis, Pierre Louis (1748). "Derivation of the laws of motion and equilibrium from a metaphysical principle (Original French text)". Histoire de l'academie des sciences et belle lettres de Berlin 1746: 267–294.
32. ^ Chevalier de Lamarck J-B, de Monet PA (1809) Philosophie Zoologique
33. ^ Joravsky D. (1959). Soviet Marxism and Biology before Lysenko. Journal of the History of Ideas 20(1):85-104.
34. ^ Darwin 1859, p. 61
35. ^ Darwin 1859, p. 5
36. ^ T. Robert Malthus (1798). "An Essay on the Principle of Population". June 29, 1999. http://www.faculty.rsu.edu/~felwell/Theorists/Malthus/Essay.htm#112. Retrieved 2008-11-03.
37. ^ Orrell, David (2007) Apollo's Arrow Toronto: HarperCollins Publishers Ltd. 
38. ^ Charles Darwin; ed. Nora Barlow (1958). "The autobiography of Charles Darwin 1809-1882". London: Collins. pp. 120. http://darwin-online.org.uk/content/frameset?viewtype=text&itemID=F1497&pageseq=124. Retrieved 2008-11-03.
39. ^ Wallace, Alfred Russel (1870) Contributions to the Theory of Natural Selection New York: Macmillan & Co. 
40. ^ Darwin 1861, p. xiii
41. ^ Darwin 1859, p. 6
42. ^ "Darwin Correspondence Online Database: Darwin, C. R. to Lyell, Charles, 28 September 1860". http://www.darwinproject.ac.uk/darwinletters/calendar/entry-2931.html. Retrieved 2006-05-10.
43. ^ Eisley L. (1958). Darwin's Century: Evolution and the Men Who Discovered It. Doubleday & Co: New York, USA.
44. ^ Kuhn TS.  (1996). The Structure of Scientific Revolution 3rd ed. University of Chicago Press: Chicago, Illinois, USA. ISBN 0-226-45808-3
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Maurice E. Stucke. "Better Competition Advocacy". http://works.bepress.com/cgi/viewcontent.cgi?article=1000&context=maurice_stucke. Retrieved 2007-08-29. "Herbert Spencer in his Principles of Biology of 1864, vol. 1, p. 444, wrote “This survival of the fittest, which I have here sought to express in mechanical terms, is that which Mr. Darwin has called ‘natural selection’, or the preservation of favoured races in the struggle for life.”"
46. ^ Darwin 1872, p. 49.
47. ^ Mills SK, Beatty JH.  (1994). The Propensity Interpretation of Fitness. Originally in Philosophy of Science (1979) 46: 263-286; republished in Conceptual Issues in Evolutionary Biology 2nd ed. Elliott Sober, ed. MIT Press: Cambridge, Massachusetts, USA. pp3-23. ISBN 0-262-69162-0.
48. ^ Haldane JBS (1932) The Causes of Evolution; Haldane JBS (1957) The cost of natural selection. J Genet 55:511-24(.
49. ^ Wright S (1932) The roles of mutation, inbreeding, crossbreeding and selection in evolution Proc 6th Int Cong Genet 1:356–66
50. ^ Dobzhansky Th (1937) Genetics and the Origin of Species Columbia University Press, New York. (2nd ed., 1941; 3rd edn., 1951)
51. ^ Mayr E (1942) Systematics and the Origin of Species Columbia University Press, New York. ISBN 0-674-86250-3
52. ^ The New York Review of Books: Darwinian Fundamentalism (accessed May 6, 2006)
53. ^ Engels F (1873-86) Dialectics of Nature 3d ed. Moscow: Progress, 1964 
54. ^ Quoted in translation in Eisenberg L (2005) Which image for Lorenz? Am J Psychiatry 162:1760 
55. ^ e.g. Wilson, DS (2002) Darwin's Cathedral: Evolution, Religion, and the Nature of Society. University of Chicago Press, ISBN 0-226-90134-3
56. ^ Pinker S.  (1995). The Language Instinct: How the Mind Creates Language. HarperCollins: New York, NY, USA. ISBN 0-06-097651-9
57. ^ Dawkins R.  (1989). The Selfish Gene. Oxford University Press: New York, NY, USA, p.192. ISBN 0-19-286092-5
58. ^ Dennett DC. (1991). Consciousness Explained. Little, Brown, and Co: New York, NY, USA. ISBN 0-316-18066-1
59. ^ For example, see Rose H, Rose SPR, Jencks C. (2000). Alas, Poor Darwin: Arguments Against Evolutionary Psychology. Harmony Books. ISBN 0-609-60513-5
60. ^ Lotka AJ (1922a) Contribution to the energetics of evolution [PDF] Proc Natl Acad Sci USA 8:147–51
Lotka AJ (1922b) Natural selection as a physical principle [PDF] Proc Natl Acad Sci USA 8:151–4
61. ^ Kauffman SA (1993) The Origin of order. Self-organization and selection in evolution. New York: Oxford University Press ISBN 0-19-507951-5
62. ^ Goldberg DE. (1989). Genetic Algorithms in Search, Optimization and Machine Learning. Addison-Wesley: Boston, MA, USA
63. ^ Mitchell, Melanie, (1996), An Introduction to Genetic Algorithms, MIT Press, Cambridge, MA.
64. ^ Falconer DS & Mackay TFC (1996) Introduction to Quantitative Genetics Addison Wesley Longman, Harlow, Essex, UK ISBN 0-582-24302-5
65. ^ a b Rice SH. (2004). Evolutionary Theory: Mathematical and Conceptual Foundations. Sinauer Associates: Sunderland, Massachusetts, USA. ISBN 0-87893-702-1 See esp. ch. 5 and 6 for a quantitative treatment.
66. ^ Lemey, Philippe; Marco Salemi, Anne-Mieke Vandamme (2009). The Phylogenetic Handbook. Cambridge University Press. ISBN 978-0-521-73071.
67. ^ http://www.nature.com/scitable/topicpage/Negative-Selection-1136
68. ^ Hamilton WD. (1964). The genetical evolution of social behaviour I and II. Journal of Theoretical Biology 7: 1-16 and 17-52. PMID 5875341 PMID 5875340
69. ^ Trivers RL. (1971). The evolution of reciprocal altruism. Q Rev Biol 46: 35-57.
* For technical audiences
o Gould, Stephen Jay (2002). The Structure of Evolutionary Theory. Harvard University Press. ISBN 0-674-00613-5.
o Maynard Smith, John (1993). The Theory of Evolution: Canto Edition. Cambridge University Press. ISBN 0-521-45128-0.
o Popper, Karl (1978) Natural selection and the emergence of mind. Dialectica 32:339-55. See 
o Sober, Elliott (1984) The Nature of Selection: Evolutionary Theory in Philosophical Focus. University of Chicago Press.
o Williams, George C. (1966) Adaptation and Natural Selection: A Critique of Some Current Evolutionary Thought. Oxford University Press.
o Williams George C. (1992) Natural Selection: Domains, Levels and Challenges. Oxford University Press.
* For general audiences
o Dawkins, Richard (1996) Climbing Mount Improbable. Penguin Books, ISBN 0-670-85018-7.
o Dennett, Daniel (1995) Darwin's Dangerous Idea: Evolution and the Meanings of Life. Simon & Schuster ISBN 0-684-82471-X.
o Gould, Stephen Jay (1997) Ever Since Darwin: Reflections in Natural History. Norton, ISBN 0-393-06425-5.
o Jones, Steve (2001) Darwin's Ghost: The Origin of Species Updated. Ballantine Books ISBN 0-345-42277-5. Also published in Britain under the title Almost like a whale: the origin of species updated. Doubleday. ISBN 1-86230-025-9.
o Lewontin, Richard (1978) Adaptation. Scientific American 239:212-30
o Weiner, Jonathan (1994) The Beak of the Finch: A Story of Evolution in Our Time. Vintage Books, ISBN 0-679-73337-X.
o Zirkle C (1941). Natural Selection before the "Origin of Species", Proceedings of the American Philosophical Society 84 (1), p. 71-123.
o Kohm M (2004) A Reason for Everything: Natural Selection and the English Imagination. London: Faber and Faber. ISBN 0-571-22392-3. For review, see  van Wyhe J (2005) Human Nature Review 5:1-4
* The Origin of Species by Charles Darwin – Chapter 4,Natural Selection
* Natural Selection- Modeling for Understanding in Science Education, University of Wisconsin
* Natural Selection from University of Berkeley education website
* T. Ryan Gregory: Understanding Natural Selection: Essential Concepts and Common Misconceptions Evolution: Education and Outreach
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